Yes you can certainly do this. Its as simple as selecting source category = tracks. You don't need to change any of the bus enables since when you are bouncing with source as tracks anything downstream from the track is automatically disengaged.
See the settings in the picture. There is no way for the sends on the original track to affect the newly bounced track. Perhaps what you are hearing is confusing you. Watch the track meters and they should be unaffected.
Noel Borthwick's post in Problem: my original track settings are controlling my bounced track was marked as the answer